PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf01103g05015.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family CO-like
Protein Properties Length: 373aa    MW: 41991.6 Da    PI: 5.5867
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf01103g05015.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box231.7e-071659239
                  zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                              ++r C+ ++e  + l+C+ ++  lC +C  e H+       Ht+
  Peinf101Scf01103g05015.1 16 QQRLCDFCGEVTALLYCRADSAKLCFSCDREVHSTnqlftkHTR 59
                              7899******99*********************66778888875 PP

2zf-B_box29.12e-096297540
                  zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkgHtvv 40
                               C++++  ++++ C ++++ lC++C  e+H+ Ht+v
  Peinf101Scf01103g05015.1 62 LCDLCDTSPASILCVTDNSVLCQNCDWESHNIHTTV 97
                              6*****************************889986 PP

3CCT61.82.2e-21322363142
                       CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvk 42 
                               Re a++RYkeK+ktR++eK+irYesRK++AesR R+KGrF+k
  Peinf101Scf01103g05015.1 322 RETAVSRYKEKKKTRRYEKHIRYESRKVRAESRTRIKGRFAK 363
                               99***************************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.7981562IPR000315B-box-type zinc finger
SMARTSM003364.0E-121562IPR000315B-box-type zinc finger
PfamPF006431.0E-51659IPR000315B-box-type zinc finger
CDDcd000212.37E-71859No hitNo description
PROSITE profilePS501199.76958103IPR000315B-box-type zinc finger
PfamPF006432.7E-76297IPR000315B-box-type zinc finger
CDDcd000212.82E-56297No hitNo description
SMARTSM003360.1463103IPR000315B-box-type zinc finger
PfamPF062035.2E-16322364IPR010402CCT domain
PROSITE profilePS5101714.763322364IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MTELKEDQED HKQQPQQRLC DFCGEVTALL YCRADSAKLC FSCDREVHST NQLFTKHTRW  60
LLCDLCDTSP ASILCVTDNS VLCQNCDWES HNIHTTVHER RPVEGFTGCP SVSELLSILG  120
FEDLSKKSLL YGGDSVGSDG GYDFSDWLVW DTPSVVSLDD LIAPNDSGHN FPAIGNRNAA  180
CGKHKEEILR QLRELSKSEP GSGNDQDETV PIKGFQSMEP GKNRQLGIKG SGFMQNSEAH  240
IVPSSEGSAF HWCSDAGEFA DQGFSSSIAD FFIETKCLHP DRDSDVGDTS GGATEEQSHN  300
PPTETFQMLP KVAYRELNSQ ERETAVSRYK EKKKTRRYEK HIRYESRKVR AESRTRIKGR  360
FAKMDYRDSP MHQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016509923.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 13-like
TrEMBLM1AT270.0M1AT27_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000295910.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA73622228
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47890.12e-80B-box type zinc finger protein with CCT domain